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Independent Research

Impact of Chemical Exposure on the Gut Flora of Fundulus heteroclitus

Graphic that says "Impact of Chemical Exposure on Fundulus heteroclitus Gut Flora Diversity"

Independent Research

Impact of Chemical Exposure on the Gut Flora of Fundulus heteroclitus

This independent research was an interdisciplinary study conducted by students from the School of Health Sciences and the College of Arts and Sciences.

Overview

During this research, the impact of benzyl butyl phthalate (BBP) was assessed along with its chemical vehicles, acetone and ethanol. The gut flora samples of each treatment group were sequenced following a 28-day exposure period. The results procured from sequencing allowed for taxonomic distribution and metagenomic functional profiling to be analyzed and compared among and within the treatment groups showing the drastic impact that BBP has on the gut flora of F. heteroclitus.

Student Team

Headshot of Elisa Torres-Yeckley

Elisa Torres-Yeckley '25

Health Science Studies

School of Health Sciences

Headshot of Alamea McCarthy

Alamea McCarthy '26

Biology

College of Arts & Sciences

Headshot of Jenna Farris

Jenna Farris '25

Biomedical Sciences

School of Health Sciences

Impact of Chemical Exposure on Fundulus heteroclitus Gut Flora Diversity

 

Abstract

Captive housing, chemical vehicle choice (acetone or ethanol), and Benzyl-Butyl-Phthalate (BBP; 0.1 ppm; 28 days) exposure differentially impact Fundulus heteroclitus. We analyzed transient and resident gut flora using amplicon sequencing of small subunit ribosomal genes. Rarefaction curves confirmed adequate sampling, and Faith’s Diversity curves showed a decline in diversity following captivity, with a significant BBP-induced decrease in ethanol but not acetone. Unweighted Principal Coordinates Analysis produced distinct clustering by treatment, indicating an impact of captivity, vehicle choice, and BBP on microbiota. Heat maps at the phylum, class, and order levels showed treatment-based differences. Linear Discriminant Analysis (LDA score > 2, with significance p < 0.05) revealed that captivity enriched five species but selected against 91 as compared to field. Acetone selected for four species and against five, while ethanol selected against five but enriched none as compared to control. BBP in acetone selected for three species and against six, while BBP in ethanol selected against one and enriched none. Metagenomic Functional Profiling Analysis indicated significant differences among treatment groups (p = 0.001 ≤ p ≤ 0.005) in enzymatic functions, particularly those related to stress pathways. These findings provide clear evidence that F. heteroclitus habitat and environmental conditions strongly influence gut microbiota. Our results support the use of F. heteroclitus in evaluating the combined effects of captivity and chemical stressors on gut flora diversity, highlighting the importance of environmental context in microbiome studies.

 

Introduction

Although Fundulus heteroclitus has been studied extensively, little is known about the relationship between its gut microbiota (residential and transient) and habitat or environmental conditions2. This is an important information gap as gut flora play an essential role in host nutrient and xenobiotic metabolism, gut mucosal barrier integrity, immune system modulation, and protection against pathogens1. F. heteroclitus is tolerant of captivity, and responds to environmental insult, and serves as a bioindicator for estuaries3.

Phthalates, a common plasticizer, give plastics their characteristic flexibility. Since neither the phthalate nor the chemical vehicle is complexed to the plastic polymer, phthalates and vehicles readily leach into the surrounding environment. Estuaries have been particularly impacted by the alarming quantity of plastic waste reaching the aquatic environment. In this study, we analyzed the impact of the plasticizer benzyl butyl phthalate (BBP) and the chemical vehicles ethanol and acetone on F. heteroclitus gut flora. We hypothesized that captivity as well as exposure to BBP and its vehicles would alter gut microbiota assembly (diversity) and functionality.

Discussion

We investigated the role of captive housing, benzyl-butyl-phthalate (BBP) exposure, and chemical vehicle choice on F. heteroclitus gut flora diversity. Analysis of mucosal and luminal gut flora produced a Rarefaction curve (Figure 1A) indicating a reasonable number of samples were assessed: it is unlikely that additional sampling would yield more species. Faith’s Phylogenetic Diversity (Figure 1B), an alpha-diversity metric where higher values indicate greater diversity, demonstrates changes in gut flora diversity associated with captivity and chemical exposure. Unweighted PCoA (beta diversity metric more sensitive to rare species), identifies significant differences among treatment groups (Figure 2). While ethanol exposure, specifically, appears to support the Anna Karenina Principle of how hosts in the same environment respond uniquely to stressors6, core microbes (taxa found among all treatment groups), also suggest there are essential microbial taxa that persist regardless of stress (Table 1). These taxa may be linked to gut stability and/or essential gut flora associated physiological functions.

Chemical vehicle choice appears to influence BBP actions on gut flora (Table 2), particularly ActinobacteriotaCampliobacteriotaFusobacteriota, and the anaerobic Desulfobacteriota. Unlike BBPE, BBPA significantly reduced the abundance of core family (Figure 3) Vibrionaceae and Lachnospiraceae while enhancing Mycoplasmataceae. It also selected for Mycoplasma mobile, a pathogenic species that binds to fish gills and causes necrosis. Acetone selected for Clostridium colinum, a pathogen responsible for causing ulcerative enteritis, which aligns with symptomology1 observed among our fish. Although a reduction in pathogenic Firmicutes among control fish, coupled with increased selection by BBP, suggests BBP is a prime selective force for Firmicutes (Table 2), BBPE did exhibit a greater change in distribution than BBPA further supporting chemical vehicle modification of BBP toxicity.

Metagenomic functional profiling of metabolic enzymes (Figure 4, Table 3), including several stress-related enzymes (SREs), indicate 76% greater enzymatic capabilities among field fish isolates as compared to captive controls. Control fish isolates, however, had greater metabolic capabilities when compared to ethanol or acetone (65% and 82%, respectively) indicating that chemical vehicles alone greatly alter gut microbiota functionality. BBP appears to further alter metabolic enzyme capabilities, specifically increasing the percent of SREs favoring the BBP groups over their respective controls (Table 3).

Fish guts were randomly pooled (N=6) to produce the replicates (n=2) for each treatment group with the expectation that this would reduce outliers and give a clearer picture of population rather than individual F. heteroclitus gut flora diversity. While this was an effective strategy, ethanol replicates were outliers in multiple metrics. The Anna Karenina Principle may explain why the ethanol replicates differ, but further studies are needed to determine if the observed differences are reproducible.

Overall, our results identified chemically-induced changes in F. heteroclitus gut flora taxonomic distribution and functionality which differed from those induced by captivity alone. Thus, our findings underscore the profound impact of plastic-associated plasticizers on the gut flora of F. heteroclitus by highlighting significant shifts in microbial diversity, functionality, and prevalence of pathogenic taxa—effects that may cascade to broader ecological and physiological consequences in estuarine environments. Ultimately, this approach provides critical insight into how anthropogenic pollutants impact gut microbiota and animal health.

 

Citations

1. Bano, L., Ilenia Drigo, Cosetta Bacchin, Marcon, B., Cocchi, M., Bonci, M., Vascellari, M., & Fabrizio Agnoletti. (2009). Application of a PCR method for the diagnosis of ulcerative enteritis: preliminary results. Italian Journal of Animal Science, 8(4), 757–760.

2. Ma, L., Hahn, M.E., Karchner, S.I., Nacci, D., Clark, B.W., Apprill, A. (2025). Environmental and population influences on mummichog (Fundulus heteroclitus) gut microbiomes. Microbiology Spectrium. 13(3).

3. Guamer F. (2007). Papel de la flora intestinal en la salud y en la enfermedad [Role of intestinal flora in health and disease]. Nutricion hospitalaria, 22 Suppl 2, 14–19.Jun Adan-Kubo, Yoshii, S., Kono, H., & Miyata, M. (2012). Molecular Structure of Isolated MvspI, a Variable Surface Protein of the Fish Pathogen Mycoplasma mobile. Journal of Bacteriology, 194(12), 3050–3057.

4. Kaplan, L. A. E., Nabel, M., Van Cleef-Toedt, K., Proffitt, A. R. & Pylypiw Jr., H. M. (2013). Impact of benzyl butyl phthalate on shoaling behavior in Fundulus heteroclitus (mummichog) populations. Marine Environmental Research 86, 70-75.

5. Zaneveld, J., McMinds, R. & Vega Thurber, R. Stress and stability: applying the Anna Karenina principle to animal microbiomes. Nat Microbiol 2, 17121 (2017).

 

Professional Application 

"This project has been instrumental in preparing me for a career in medicine by strengthening my skills in organization, critical thinking and scientific communication. Working with in this lab, I learned to manage feeding and dissection schedules while helping coordinating timelines to ensure samples were sent out at the correct stages. Once we received the results, I, along with other members of the group, engaged in in-depth data analysis to interpret the impact of chemical exposure on gut flora—examining distribution, pathogenicity and functionality. The process was tedious and time-intensive, but incredibly rewarding, as it deepened my understanding of how environmental factors can influence biological systems. Presenting our findings at scientific symposiums, both this year and last, boosted my confidence and refined my ability to clearly communicate complex ideas. This project reinforced the value of patience, precision and persistence, all of which are critical in medical research and clinical practice." - Elisa Torres-Yeckley '25

 

For Further Discussion

This serves as an overview of the project and does not include the complete work. To further discuss this project, please email Elisa Torres-Yeckley.

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